The .45 Colt has straight walls, needs a certain amount of pressure to expand and seal. Powder-puff loads won't do that. The original .44-40 chambering is bottle-necked with a slight taper and has thin case walls, no problems with low pressure loads sealing with that. Marlin's oversized chamber doesn't help, maybe just sizing the case down to the bottom of the bullet would help. It'd mean your reloads would probably only chamber in one gun, though. Some runs of 1894s had divots on the bolt's chamber end sides to release gas, is your gun made that way? You could also gear up with a tubing micrometer and look for case lots with thinner walls.
The large chamber in .45 has had some past discussion here, my feeling is that it's deliberate to allow a stubby straight wall case to reliably feed. To me, it's telling that no one chambered a repeater in .45 Colt until modern times. The original skinny rim diameter was one problem.
Stan S.